A brief overview on the BioPAX and SBML standards for formal presentation of complex biological knowledge
نویسنده
چکیده
A brief informal overview on the BioPAX and SBML standards for formal presentation of complex biological knowledge.
منابع مشابه
Representing, storing and accessing molecular interaction data: a review of models and tools
One important aim within systems biology is to integrate disparate pieces of information, leading to discovery of higher-level knowledge about important functionality within living organisms. This makes standards for representation of data and technology for exchange and integration of data important key points for development within the area. In this article, we focus on the recent development...
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Online databases store thousands of molecular interactions and pathways, and numerous modeling software tools provide users with an interface to create and simulate mathematical models of such interactions. However, the two most widespread used standards for storing pathway data (Biological Pathway Exchange; BioPAX) and for exchanging mathematical models of pathways (Systems Biology Markup Lang...
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Online databases store thousands of molecular interactions and pathways, and numerous modelling software tools provide users with an interface to create and simulate mathematical models of such interactions. However, the two most widespread used standards for storing pathway data (biological pathway exchange; BioPAX) and for exchanging mathematical models of pathways (systems biology markup lan...
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MOTIVATION The biological pathway exchange language (BioPAX) and the systems biology markup language (SBML) belong to the most popular modeling and data exchange languages in systems biology. The focus of SBML is quantitative modeling and dynamic simulation of models, whereas the BioPAX specification concentrates mainly on visualization and qualitative analysis of pathway maps. BioPAX describes...
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Motivation: The biological pathway exchange language (BioPAX) and the systems biology markup language (SBML) belong to the most popular modeling and data exchange languages in systems biology. The focus of SBML is quantitative modeling and dynamic simulation of models, whereas the BioPAX specification concentrates mainly on visualization and qualitative analysis of pathway maps. BioPAX describe...
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عنوان ژورنال:
- CoRR
دوره abs/1109.4919 شماره
صفحات -
تاریخ انتشار 2011